8 Genome Annotation Genomics Tutorial 2020 2 0 Do 8. genome annotation ¶. 8.1. preface ¶. in this section you will predict genes and assess your assembly using augustus and busco, as well as prokka. note. you will encounter some to do sections at times. write the solutions and answers into a text file. 8.2. This is an introductory tutorial for learning computational genomics mostly on the linux command line. you will learn how to analyse next generation sequencing (ngs) data. the data you will be using is real research data. the final aim is to identify genome variations in evolved lines of bacteria that can explain the observed biological phenotypes.
8 Genome Annotation Genomics Tutorial 2020 2 0 Do 2020.2.0 1. introduction; 2. tool installation; 3. quality control; 4. genome assembly. Computational genomics tutorial, release 2020.2.0 2.1.1installing conda channels to make tools available different tools are packaged in whatconda13 calls channels. we need to add some channels to make the bioinformatics and genomics tools available for installation: # install some conda channels # a channel is where conda looks for packages. 8.3. learning outcomes¶ after studying this section of the tutorial you should be able to: explain how annotation completeness is assessed using orthologues. use bioinformatics tools to perform gene prediction. use genome viewing software to graphically explore genome annotations and ngs data overlays. Read the docs v: latest . versions latest stable downloads pdf html epub on read the docs project home builds.
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